NMR- data [1] of serine:
Atom | Atomtyp | chemical shift [ppm]1 | Random Coil chem. shift 3 |
Random Coil chem. shift 4 |
|||
---|---|---|---|---|---|---|---|
Mittelwert | Standardabweichung | Datenbasis2 | |||||
H | H | 8.279 | 0.615 | 50449 | 8.31 | 8.26 | |
Hα | H | 4.483 | 0.497 | 39760 | 4.47 | 4.78 | |
Hβ2 | H | 3.868 | 0.279 | 36618 | 3.89 | 3.85 | |
Hβ3 | H | 3.841 | 0.296 | 33894 | 3.87 | 3.85 | |
Hγ | H | 5.518 | 1.205 | 678 | |||
C | C | 174.601 | 3.204 | 32500 | 174.6 | 173.1 | |
Cα | C | 58.716 | 2.219 | 45339 | 58.3 | 56.4 | |
Cβ | C | 63.713 | 5.383 | 42264 | 63.8 | 63.3 | |
N | N | 116.28 | 3.93 | 42792 | 115.7 | 116.6 | |
proportion of proteins | pK2 COOH | pK1COOH | isoelectrical point |
pK1NH2 | pK2NH2 | ||
7.1% | – | 2.21 | 5.68 | 9.15 | – | ||
CAS- number | molar mass | formula | density | melting point | solubility | ||
|
105,09 g·mol−1 | C3H7NO3 | 215–225 °C |
1 Depending on the type of atom it was 1H, 13C or 15N chemical shift. 1H und 13C relative to TMS and 15N relative to liquid ammonia
2 Number of individual chemical shift data for averaging according to [2]
3 with Alanine as neighborhood in the hexapeptide Gly-Gly-X-Ala-Gly-Gly [3]
4 with Proline as neighborhood in the hexapeptide Gly-Gly-X-Pro-Gly-Gly [3]
3D- Modell
sources:
[1] “BioMagResBank”, Eldon L. Ulrich; Hideo Akutsu; Jurgen F. Doreleijers; Yoko Harano; Yannis E. Ioannidis; Jundong Lin; Miron Livny; Steve Mading; Dimitri Maziuk; Zachary Miller; Eiichi Nakatani; Christopher F. Schulte; David E. Tolmie; R. Kent Wenger; Hongyang Yao; John L. Markley; Nucleic Acids Research 36, D402-D408 (2008) doi: 10.1093/nar/gkm957
[2] http://www.bmrb.wisc.edu/ last visit march 2017
[3] David S. Wishart, Colin G. Bigam, Arne Holm, Robert S. Hodges, Brian D. Sykes; Journal of Biomolecular NMR
January 1995, Volume 5, Issue 1, pp 67-81 doi:10.1007/BF00227471
[4] Wikipedia http://de.wikipedia.org/wiki/Aminos%C3%A4uren (last visit january 2014)
[5] Wikipedia http://de.wikipedia.org/wiki/Alanin (las visit Januar 2014)proportion of proteinsproportion of proteins
3D Mol: Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829