Overview NMR-Data [1] Asparagine:
Atom | Atomtyp | Chemical shift[ppm]1 | Random Coil chem. shift 3 |
Random Coil chem. shift 4 |
|||||
---|---|---|---|---|---|---|---|---|---|
average | standard deviation | entries2 | |||||||
H | H | 8.349 | 2.572 | 33343 | 8.40 | 8.37 | |||
Hα | H | 4.663 | 0.367 | 26049 | 4.74 | 5.00 | |||
Hβ2 | H | 2.801 | 0.335 | 24527 | 2.83 | 2.82 | |||
Hβ3 | H | 2.744 | 0.365 | 23670 | 2.75 | 2.67 | |||
Hδ21 | H | 7.341 | 0.916 | 18777 | 7.59 | 7.60 | |||
Hδ22 | H | 7.148 | 0.933 | 18559 | 6.91 | 6.92 | |||
C | C | 175.235 | 3.259 | 20665 | 175.2 | 173.6 | |||
Cα | C | 53.538 | 1.989 | 28933 | 53.1 | 51.3 | |||
Cβ | C | 38.702 | 2.026 | 27479 | 38.9 | 38.7 | |||
Cγ | C | 176.396 | 7.175 | 2125 | 177.2 | 177.1 | |||
N | N | 118.896 | 4.414 | 27893 | 118.7 | 119.0 | |||
N | N | 112.891 | 11.509 | 16081 | 112.7 | 112.8 | |||
proportion of proteines | pK2 COOH | pK1COOH |
|
pK1NH2 | pK2NH2 | ||||
4,4% | – | 2.02 | 5.41 | 8.80 | – | ||||
CAS- number | molar mass | formula | density | melting point | solubility | ||||
|
132,12 g·mol−1 | C4H8N2O3 | not good in Wasser (22 g·l−1 for 20 °C, Monohydrat) |
1 Depending on the type of atom it was 1H, 13C or 15N chemical shift. 1H und 13C relative to TMS and 15N relative to liquid ammonia
2 Number of individual chemical shift data for averaging according to [2]
3 with Alanine as neighborhood in the hexapeptide Gly-Gly-X-Ala-Gly-Gly [3]
4 with Proline as neighborhood in the hexapeptide Gly-Gly-X-Pro-Gly-Gly [3]
3D- Modell
sources:
[1] “BioMagResBank”, Eldon L. Ulrich; Hideo Akutsu; Jurgen F. Doreleijers; Yoko Harano; Yannis E. Ioannidis; Jundong Lin; Miron Livny; Steve Mading; Dimitri Maziuk; Zachary Miller; Eiichi Nakatani; Christopher F. Schulte; David E. Tolmie; R. Kent Wenger; Hongyang Yao; John L. Markley; Nucleic Acids Research 36, D402-D408 (2008) doi: 10.1093/nar/gkm957
[2] http://www.bmrb.wisc.edu/ last visit march 2017
[3] David S. Wishart, Colin G. Bigam, Arne Holm, Robert S. Hodges, Brian D. Sykes; Journal of Biomolecular NMR
January 1995, Volume 5, Issue 1, pp 67-81 doi:10.1007/BF00227471
[4] Wikipedia http://de.wikipedia.org/wiki/Aminos%C3%A4uren (last visit january 2014)
[5] Wikipedia http://de.wikipedia.org/wiki/Asparagin (last visit january 2014)
3D Mol: Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829